New California campus may threaten shrimp habitat

California Freshwater Shrimp
Photo by Larry Serpa
The California Freshwater Shrimp
A ghost-like crustacean we can't afford to lose

Why should we be concerned about a crustacean that is less than 2.5 inches long, and will never be abundant enough to serve on the top of a pizza? Even if you took the trouble to stick your head beneath the surface of the water, you probably wouldn’t be able to see one as these creatures are elusive and hard to find. Would it really matter if they just disappeared?

Yes it would. Ecologically, the California freshwater shrimp occupy a role as detritus feeders that no other stream animal could fill. When you rip an important strand out of a food web, there’s no way to know how much damage will be done. The shrimp’s presence, or absence, can also tell us a lot about the streams. Flowing water is their home, and they are mute witnesses to the condition and history of the streams they inhabit. Continually bathed by the water, they must face whatever flows toward them. Pollution, siltation, introduced species, and other factors will all affect them to some extent. If they disappear, we can be sure that something detrimental has happened to the stream. We will have lost much more than just the shrimp.

California freshwater shrimp (Syncaris pacifica) live in lowland perennial streams in Sonoma, Marin and Napa counties. None have ever been found higher than 380 feet above sea level. Before human impacts, the shrimp were probably common in many streams within the three county area. However, a catastrophe which greatly reduces their population can now easily lead to their disappearance from a stream. Channelization, introduced predators, pollution, and water withdrawal have subsequently eliminated them from most of the original habitat, and made recolonization of streams difficult. By the time biologists began to study the crustacean, they were only known to occur in nine streams. In 1964, the shrimp were eliminated from Santa Rosa Creek, when the stream was channelized and lined with concrete for flood control purposes. By 1975, shrimp were thought to have disappeared from five more streams, apparently leaving populations only in East Austin and Salmon Creeks in Sonoma County, and Lagunitas Creek in Marin County. The closely related Pasadena Freshwater Shrimp (Syncaris pasadenae), a native to southern California, disappeared forever in the 1930s. Extinction now also threatened the only remaining species in the genus! Recognizing this danger, California freshwater shrimp were listed as endangered by the California Fish & Game Commission in 1980.

Fortunately, new populations were discovered in Sonoma Creek in Sonoma County and Huichica Creek in Napa County by 1981. During a subsequent distribution study of the species in the early 1980s, I sampled 146 sites in 53 potential streams, and found the shrimp in six additional streams: Big Austin, Green Valley, Jonive, Yulupa, and Blucher creeks in Sonoma County, and Stemple and Walker creeks in Marin County. However, the populations in many of these streams are small and could disappear even without any additional impacts. For example, only one shrimp was found in Walker Creek, even though several miles of the stream had been waded and sampled with nets. The shrimp were listed by the U.S. Fish & Wildlife Service as endangered in 1988. Since that time, shrimp have been found surviving in the Napa River and its Garnett Creek tributary, Keys Creek (a tributary of Walker), and Redwood Creek (a tributary of Jonive). A total of eleven separate stream systems (sixteen streams) are inhabited, but the future of the species is still uncertain. Thousands of shrimp live in Lagunitas, Salmon, and Blucher Creeks, but even in these streams, a single toxic spill could wipe out the bulk of the population.

The shrimp are found within stream pools, in areas away from the main current, where there are often undercut banks, exposed root systems, and vegetation hanging into the water. They need all of these habitat components for survival. The best habitats have a mixture of willow and alder trees. Some of the shrimp streams are completely enclosed with streamside vegetation, while others have just a few scattered trees along the banks. In the latter case, dark, shaded water is necessary to help protect them from visual predators. Too little or too much water in the stream can present a problem. Most shrimp are found in areas that are one to three feet deep. For the most part, only the sides of the pools are utilized. Shrimp avoid the pool bottoms, and are only found there after being disturbed, or when populations are especially high.

Filamentous blackberry roots sprout from stems wherever they extend beneath the surface, and form an ideal refuge most of the year. At times of higher flow, though, these roots tend to be lifted out of the stream by the rising water, and left in a useless tangle above the bank when the water recedes. Dense, beard-like willow roots, often extending more than a foot out into the water, are more dependable. Alders provide both short filamentous roots, and the coarser hard roots that support the stream banks. As the bank soils partially erode from the force of the current, a network of the rigid roots is exposed. Overhanging the undercut banks, these roots reduce the erosive power of the water, and protect the banks from further damage. The roots form a useful highway system for the shrimp. During the heavy flows of water accompanying storms, the shrimp abandon the softer vegetation and travel close to these sturdy roots, or even move within the undercut banks for protection.

California freshwater shrimp are detritus feeders, feeding on the buffet of small, diverse particles brought downstream to their pools by the current. As the water slows, the particles are filtered out by the exposed roots and other vegetation. The shrimp simply brush up the food with tufts at the ends of their small claws, and lift the collected morsels to their mouths. Much of this material is picked up indiscriminately, and contains indigestible material along with the more edible items. To get enough useful food, the shrimp have to eat a lot of this detritus. Larger pieces of detritus are picked up or manipulated with the claws. Colonized by algae, bacteria, fungi, and microscopic animals, the particles are more nutritious than they seem. Although shrimp usually walk slowly about the roots as they feed, these crustaceans will undertake short swims to obtain particularly tasty items. In laboratory studies, the shrimp became highly agitated whenever “Tetramin” flake fish food was added to the water. They walked or swam about the aquarium tank until they located a flake, and then broke it into manageable pieces with their claws.

Most of the shrimp are translucent, almost ghost-like, with colored flecks scattered across their bodies. This semi-transparent nature provides ideal camouflage from most native predators, such as salmonid fish. When startled by a potential predator, they remain motionless. Even the intestinal tract, crammed full of detritus, just looks like another root. Some of the large females sport a more dramatic coloration of a deep chocolate brown with a tan dorsal stripe, which serves to camouflage them well against the thick alder roots, or while they hide inside the darkened undercut banks. Non-native fish such as bluegill and bass are not fooled by all this camouflage, since they carefully search vegetation for prey. If grabbed by a predator, a shrimp fights back. With a dramatic flexing of its body, a shrimp can jam its unicorn-like rostral spine into the roof of a fish’s mouth with considerable force, and the pain can cause the fish to spit it out or permit it to escape. Shrimp found with broken spines have probably survived such an encounter. Most of the shrimp that find themselves in a sunfish’s mouth, though, are soon swallowed. Whenever these voracious introduced predators show up, the shrimp population in a stream is in serious trouble.

Although the shrimp breed in September, the females retain the 50-120 fertilized eggs on their abdominal swimming legs throughout the winter. This adaptation insures that the juveniles do not have to face the heavy stream flows of the rainy season. Instead, the females protect the delicate eggs with their own bodies during this perilous period. The young shrimp are finally released as miniature adults in late Spring, after the rainy season is almost over, and the streams are carrying much less water. In this more hospitable environment, the young grow rapidly. California’s prolonged summer drought cuts the stream flow even more, and some shrimp streams are reduced to isolated pools in late summer and fall. As temperatures rise and oxygen diminishes, trapped fish begin to die. This is still good habitat for the shrimp, though, and the dead fish are simply treated as food. As long as some water remains in the pools, the shrimp can survive. The following winter these young shrimp will have to get through a rainy season on their own. They must be about a year and a half old before they in turn are mature enough to breed. Many will be eaten or die of other causes before they reach that age. A few lucky individuals will live for as long as three years. Overall, the California Freshwater Shrimp is a hardy species, and the remaining populations will not give up easily.

The shrimp are not alone in their fight for survival. Dr. Joel Hedgpeth, who studied the shrimp when they were still abundant, has always been a strong and vocal champion of the species. The Marin Municipal Water District regulates the flows in Lagunitas Creek from an upstream dam, insuring that the shrimp have the water they need. Lagunitas is the only shrimp stream on federal and state land, all others are in private ownership. However, private owners have already done a lot for the shrimp. At Blucher Creek, The Nature Conservancy has worked with landowners along the stream to protect and improve their habitat. In a similar manner, the Napa Resource Conservation District interacted with landowners and managers of Huichica Creek to develop the Huichica Creek Natural Resource Protection and Enhancement Plan. Through its implementation, pesticide and sediment movement into the stream has been reduced, and water is only taken out of the stream at times of heavy flow, with screens on the intake structures to prevent shrimp from being sucked along with the water.

Finally, the incredible efforts of the students of Brookside School and their Shrimp Club must be recognized. These elementary school students adopted this endangered species in 1993, and have worked diligently on its behalf ever since. They have helped educate the surrounding landowners, legislators, and general public about the species. In the process, they have also raised over a hundred thousand dollars, and used the funds and their own hands in the work of stream restoration at Stemple Creek. It is reassuring that so many people have come together to help preserve this small crustacean. With this much effort and good will, we can be reasonably confident that the California Freshwater Shrimp will not follow the Pasadena Shrimp into extinction.

Larry Serpa
(Mr. Serpa is an Area Ecologist with The Nature Conservancy.)

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A "Living Fossil" in the San Francisco Bay Area? Tadpole Shrimp
Copyrighted Photo by Larry Serpa, used by permission
Anteriodorsal view of a vernal pool tadpole shrimp, out of water.

What is a Living Fossil?

Quick!! How many "living fossils" can you name? Would you believe that there is a "living fossil" right here in the San Francisco Bay area? The Don Edwards San Francisco Bay National Wildlife Refuge, located in the South San Francisco Bay, has seasonal freshwater pools which contain the vernal pool tadpole shrimp (Lepidurus packardi), a freshwater crustacean "living fossil." The vernal pool tadpole shrimp derives its name from looking somewhat like a frog or toad tadpole at first glance, and from being found only in "vernal" pools (temporary springtime pools). Now you ask, exactly what is a "living fossil?"

A living fossil is an organism living today that appears to be identical to specimens in the fossil record. The most famous example is probably the coelacanth (Latimeria chalumnae), a primitive, lobe-finned fish from the Cretaceous Period. Coelacanths were known only from their abundant fossils until a live coelacanth was recovered by a deep-sea trawler in the Indian Ocean in 1938. This fish still lives in the ocean depths, virtually unchanged from its fossil ancestors of approximately 70 million years ago.

Vernal Pool Tadpole Shrimp
photo by Dr. J.L. King, used by permission
A ventral view of a vernal pool tadpole shrimp, note the paired phyllopods, paired ventral antennae, segmented abdomen, and orange egg sac.

Tadpole shrimp are considered living fossils because their basic body characteristics have remained the same for millions of years. General characteristics of tadpole shrimp include a shield-like carapace (shell), a fused pair of eyes on top of the carapace, a segmented abdomen, and paired tail filaments. Tadpole shrimp also have paired ventral appendages called phyllopods (phyllo = "leaf" and pod = "feet"), which beat in a wavelike motion from front to back and act as propulsion for the animal. At the base of these paired phyllopods is a ventral midline food groove, which effectively funnels microscopic food particles up to the animal’s mouth. This basic design appears to be well-adapted to the vernal pool environment, since these basic body characteristics have remained unchanged over time.

Tadpole shrimp belong to either the genus Triops or the genus Lepidurus. The tadpole shrimp in the genus Lepidurus have a paddle-shaped flap between the tail filaments, which shrimp in the genus Triops do not. Lepidurus packardi is the only species in the genus Lepidurus known from California’s Central Valley or the San Francisco Bay area.

Vernal Pool Habitat and Vernal Pool Tadpole Shrimp Life Cycle

Vernal pools are ephemeral (short-lived) wetlands that form in areas where a Mediterranean climate combines with shallow depressions underlain by soil types that restrict the downward percolation of water. A Mediterranean climate is a moderate climate with distinct and regular wet and dry seasonality. In California, the soils which form the water-restricting layer associated with vernal pools can consist of hardpan, clay, or basalt, and in the Bay area are often clays. The soils on which vernal pools form are patchy, so vernal pools are typically clustered into pool complexes. These complexes vary greatly in the number, size, and density of pools they contain. Some complexes have only a few large pools, while others contain hundreds of small pools.

In California, ephemeral pools are typically referred to as vernal pools (vernal = spring) because the pools are filled and wet during the winter and spring rainy season. The rest of the year, these pools are dry. Outside of the United States, ephemeral wetlands also are known from areas in Africa, Australia, Canada, Central America, India, the Mediterranean basin, and many of the countries in the former Soviet Union. Ephemeral wetlands in different regions are variously referred to as alpine wet meadows, dayas, hogwallows, pans, playas, rain pools, seasonal wetlands, springtime pools, temporary ponds, temporary pools, or tundra pools.

3 Vernal Pool Tadpole Shrimp
Photo by Dr. J.L. King, used by permission
Differences in size and body shape in vernal pool tadpole shrimp taken from the same pool in one dipnet sweep.

As California’s rainy season begins in the fall, dry soil in pool bottoms becomes saturated. As rains continue to fall throughout winter, the pools fill with water and a rich community begins to develop. This community includes invertebrate animals such as crustaceans, flatworms, snails, and insects, as well as vertebrates such as amphibians, birds, and some mammals. Vernal pools are important breeding sites for frogs and salamanders, as well as feeding and resting sites for migrating waterfowl. As pools gradually dry down during the spring, the well-known "bathtub ring" of flowers forms at the pool margins. This is the time period when vernal pools are at their showy best, with a striking profusion of yellow, white, and purple blooms often totally carpeting the pool bottoms and pool margins. At this time, mobile animals begin to disperse from the vernal pools and the vernal pool plants start to produce seeds. As the pools continue to dry, plants turn brown, and the soil dries and may crack. Very few perennial plants have adapted to the vernal pool environment, since California rainfall patterns can include extended drought-like conditions. Annual wetland plants are the most common plants in typical vernal pool communities.

Vernal pools are a unique type of habitat, since they are freshwater aquatic ecosystems that are typically dry 7-8 months out of the year. Vernal pool tadpole shrimp (like the related "fairy shrimp" species) only live in ephemeral freshwater habitats, an environment with very few aquatic predators, especially fish. These shrimp are unknown from any marine, estuarine, or riverine system. Vernal pool tadpole shrimp and fairy shrimp serve as food for a variety of vertebrate and invertebrate animals in vernal pools. Both tadpole shrimp and fairy shrimp are readily consumed if there is a temporary connection of vernal pools to more permanent water bodies containing fish. If the connection becomes permanent, these vernal pool crustaceans will eventually disappear, since they have no defenses against direct predation by fish.

Vernal Pool Tadpole Shrimp Cyst
photomicrograph by Bradley Goettle
Note the uneven, granular surface and "parchment" coloration of this vernal pool tadpole shrimp cyst.

A key adaptation of the vernal pool tadpole shrimp to this alternately wet and dry vernal pool environment is the numerous drought-resistant cysts (eggs) they produce. When the vernal pool eventually dries down, these cysts remain dormant and viable for up to ten years while waiting for the next rains to initiate their hatching. These cysts also can withstand the often extremely high temperatures of California summers while embedded in the top layers of the vernal pool soil sediments. A female vernal pool tadpole shrimp may produce thousands of cysts during her lifespan. Some of these cysts hatch out during the same wet season. However, for reasons that still remain unclear, a large portion of these cysts produced in any given wet season will only hatch after the pool dries down and subsequently refills, possibly several years later. The vernal pool tadpole shrimp is different from almost all California fairy shrimp since it is able to produce more than one generation in a single wet season. Another strategy for adapting to the vernal pool environment is reaching sexual maturity rapidly (in as little as three weeks). Rapid sexual maturity allows the vernal pool tadpole shrimp to hatch, mature, and produce numerous drought-resistant cysts quickly after the pools refill, thereby effectively using such a short-lived environment. This temporal isolation (separated by time) allows the vernal pool tadpole shrimp to occupy a harsh environment to which few predator species have adapted.

Vernal pool tadpole shrimp differ from the related fairy shrimp by the way they move; vernal pool tadpole shrimp swim or scoot along typically muddy or rocky bottom sediments "right side up," whereas fairy shrimp swim higher up in the water "upside down." Adult vernal pool tadpole shrimp are much larger in body mass than adult fairy shrimp and may reach an inch and a half in length, whereas fairy shrimp are often less than half an inch in length. Fairy shrimp can be whitish or have some orange body parts, but they are almost translucent in comparison to vernal pool tadpole shrimp, which are typically olive or grey colored. This olive or grey coloration is sometimes mottled, and helps provide good camouflage for the vernal pool tadpole shrimp to blend in with aquatic plants or when they burrow horizontally in muddy bottom sediments. Vernal pool tadpole shrimp are often quite hard to spot in the water unless they are seen in motion.

Impacts to Vernal Pool Habitat

The main threat to the continued existence of the vernal pool tadpole shrimp, as well as almost all other vernal pool species, is continuing loss of habitat, especially due to residential/commercial development and lands converted to agricultural uses. Vernal pool habitat is rapidly diminishing throughout California. This conversion or use of lands containing the remaining vernal pools is expected to continue because of the desirability of and economic feasibility of building on essentially flat lands (slopes of no more than 3-4 %) which are often close to metropolitan areas. Present estimates for the loss of vernal pool habitat in California’s Central Valley range from 65-90% of its former extent. In Southern California, San Diego County has documented the loss of 90-95% of its historic vernal pool habitat. Vernal pools and vernal pool complexes also are subject to threats in the form of: interrupted watersheds for pools and complexes, invasions of aggressive non-native plant species, gravel mining, fertilizer and pesticide contamination, overgrazing by livestock, off-road vehicle use, and contaminated stormwater runoff.

Species Range and Status as Federally Endangered

The vernal pool tadpole shrimp is a species found only in California. The shrimp ranges in the Central Valley from around Visalia (Tulare County) in the south to the Redding area (Shasta County) in the north. The easternmost known location is around 3,000 feet in elevation in the central Sierra Nevada foothills (Merced County). The westernmost known location is on the Warms Springs Seasonal Wetlands of the Don Edwards San Francisco Bay National Wildlife Refuge in Alameda County. This property, which contains some of the very few vernal pools in the South San Francisco Bay Area, was acquired by the U.S. Fish and Wildlife Service in 1992. The vernal pool tadpole shrimp also was recently discovered on the privately owned Pacific Commons Project site in Fremont which is adjacent to the Don Edwards San Francisco Bay National Wildlife Refuge. These two locations are unique since they comprise the only known population of the vernal pool tadpole shrimp outside of the Central Valley.

A very important thing to remember is that even though the vernal pool tadpole shrimp may be locally abundant in some places, it is globally rare. The vernal pool tadpole shrimp was listed by the U.S. Fish and Wildlife Service as endangered on September 19, 1994, due to its very limited distribution, the small number of remaining populations, and the number and nature of threats to this species' continued existence. A species is listed by the Federal Government when scientific information has substantiated that the species’ continued existence is in jeopardy, and that the species will likely go extinct without protections afforded by the Endangered Species Act. The Endangered Species Act is jointly administered by the U.S. Fish and Wildlife Service and the National Marine Fisheries Service. A species may be federally listed as either threatened (when a species is likely to become an endangered species within the foreseeable future throughout all or a significant portion of its range if not protected) or endangered (when a species is in danger of extinction within the foreseeable future throughout all or a significant portion of its range if not protected.) Anyone proposing an action or project which would either directly or indirectly affect the vernal pool tadpole shrimp, or any other species federally listed as threatened or endangered, must obtain a permit from the Service. This permit allows for the "take" (" harass, harm, capture, or... kill...") of threatened or endangered species protected by the Endangered Species Act. However, these take permits are only issued if the proposed take would not jeopardize the continued existence of the species.

The Next Million Years

What can we do to help ensure that these remarkably well-adapted and virtually defenseless animals have a chance to make it the next million years? One long-range planning method is to formulate a Habitat Conservation Plan to plan future land uses for a project or a region, such as an entire watershed or a County. A Habitat Conservation Plan is designed to try to accommodate both the resource needs and economic needs of everyone involved, including the project proponents, regions or counties, other regulatory agencies, and the U.S. Fish and Wildlife Service. Other efforts currently underway include: conservation easements with landowners allowing compatible land uses while retaining vernal pool habitat intact; the establishment of preservation banks and creation banks to preserve and create vernal pool habitat, respectively; establishment of National Wildlife Refuges; consultation with Federal agencies to reduce or avoid effects on threatened or endangered species; and research on the rearing and reproduction of this endangered crustacean species. Individuals, municipalities, and agencies also can help protect the vernal pool tadpole shrimp and other vernal pool species by preventing or reducing impacts to vernal pools, as previously mentioned in this article.

But, by far, the most important thing we can do is to ensure that vernal pool tadpole shrimp have enough suitable habitat to be able to continue to hatch, mate and reproduce for the next million years. Then, hopefully, like us, future generations will also have the chance to marvel at this remarkable animal. As a child once responded when asked why we should save endangered species: "Because we can."

Bradley Goettle is a biologist in the Endangered Species Division of the U.S. Fish and Wildlife Service, in Sacramento. He has assisted in field research on the vernal pool tadpole shrimp, and since joining the U.S. Fish and Wildlife Service, has conducted consultations on actions potentially affecting the vernal pool tadpole shrimp, assisted in revisions of the survey protocols to include dry season sampling as a means for determining presence/absence of federally listed vernal pool crustaceans, and is currently coordinating threatened and endangered species permit issues.

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